The hotspots provide a view beyond the commonly used metabolic pathways and gene ontologies. The hotspot-based visualization approach enables interactive exploration of regulatory interactions in differentially expressed gene sets, and it allows a researcher to explore gene expression in direct relation to the affected cellular gene network. The hotspots provide a view beyond the commonly used metabolic pathways and gene ontologies.ĪB - SpotXplore is a plugin for Cytoscape for extraction and visualization of differentially expressed subnetworks (hotspots) from gene networks. We have developed a new Cytoscape 3.0 application Orthoscape aimed to facilitate evolutionary analysis of gene networks and visualize the results. The hotspot-based visualization approach enables interactive exploration of regulatory interactions in differentially expressed gene sets, and it allows a researcher to explore gene expression in direct relation to the affected cellular gene network. Nevertheless, only three plugins tagged ‘network evolution’ found in Cytoscape official app store and in literature. The plug-in provides an efficient visualization. N2 - SpotXplore is a plugin for Cytoscape for extraction and visualization of differentially expressed subnetworks (hotspots) from gene networks. We present the EntOptLayout Cytoscape plug-in based on a recently developed network representation theory. Rights: University of Groningen, Johann Bernoulli Institute for Mathematics and Computer Science For example Cytoscape added 3DScape plug-in that support 3D visualization and layout of Cytoscape networks 16. T2 - A Cytoscape plugin for visual exploration of hotspot expression in gene regulatory networks In recent years, some of the above mentioned tools added 3D visualization plugins.
0 Comments
Leave a Reply. |